utils package

Submodules

• utils.RANOLogic module
  • RANOLogic
    • RANOLogic.setDefaultParameters()
• utils.config module
  • debug
  • dynunet_pipeline_path
  • module_path
  • reports_path
  • test_data_path
• utils.enums module
  • ClinicalStatus
    • ClinicalStatus.StableOrImproved
    • ClinicalStatus.Worse
    • ClinicalStatus.description()
  • CurrScanRole
    • CurrScanRole.CR
    • CurrScanRole.PD
    • CurrScanRole.PR
    • CurrScanRole.SD
    • CurrScanRole.description()
  • NonTargetOrNonMeasLes
    • NonTargetOrNonMeasLes.NoneOrStableOrCR
    • NonTargetOrNonMeasLes.Worse
    • NonTargetOrNonMeasLes.description()
  • OverallResponse
    • OverallResponse.CCR
    • OverallResponse.CPD
    • OverallResponse.CPR
    • OverallResponse.CR
    • OverallResponse.CSD
    • OverallResponse.PCR
    • OverallResponse.PD
    • OverallResponse.PPD
    • OverallResponse.PPR
    • OverallResponse.PR
    • OverallResponse.PSD
    • OverallResponse.SD
    • OverallResponse.description()
  • RefScanRole
    • RefScanRole.Baseline
    • RefScanRole.CR
    • RefScanRole.PD
    • RefScanRole.PPD
    • RefScanRole.PR
    • RefScanRole.SD
    • RefScanRole.description()
  • Response
    • Response.CR
    • Response.PD
    • Response.PR
    • Response.SD
    • Response.description()
    • Response.description_detailed()
  • SteroidDose
    • SteroidDose.No
    • SteroidDose.Yes
    • SteroidDose.description()
  • TumorComponentsForEval
    • TumorComponentsForEval.CE
    • TumorComponentsForEval.Mixed
    • TumorComponentsForEval.NonCE
    • TumorComponentsForEval.description()
• utils.measurements2D_utils module
  • LineNodePair
    • LineNodePair.annotate_with_text()
    • LineNodePair.cleanup()
    • LineNodePair.create_fiducialNodeFor_text()
    • LineNodePair.create_twoLineNodes()
    • LineNodePair.enhancing
    • LineNodePair.fiducialNodeForText
    • LineNodePair.get_coords()
    • LineNodePair.get_line_length_product()
    • LineNodePair.get_line_lengths()
    • LineNodePair.lesion_idx
    • LineNodePair.measurable
    • LineNodePair.observations
    • LineNodePair.set_color_depending_on_orthogonality()
    • LineNodePair.set_coords()
    • LineNodePair.target
    • LineNodePair.timepoint
    • LineNodePair.uponLineNodeModifiedEvent()
  • LineNodePairList
    • LineNodePairList.custom_sort()
    • LineNodePairList.decide_enhancing()
    • LineNodePairList.decide_measurable()
    • LineNodePairList.decide_target()
    • LineNodePairList.get_number_of_disappeared_target_lesions()
    • LineNodePairList.get_number_of_new_measurable_lesions()
    • LineNodePairList.get_number_of_new_target_lesions()
    • LineNodePairList.get_number_of_targets()
    • LineNodePairList.get_rel_area_change()
    • LineNodePairList.get_sum_of_bidimensional_products()
    • LineNodePairList.pop()
    • LineNodePairList.uponModified()
  • Measurements2DMixin
    • Measurements2DMixin.centerTimepointViewsOnCenterPoint()
    • Measurements2DMixin.centerTimepointViewsOnFirstMarkupPoint()
    • Measurements2DMixin.coords_ijk_to_world()
    • Measurements2DMixin.instance_segmentations_matched
    • Measurements2DMixin.observations
    • Measurements2DMixin.observations2
    • Measurements2DMixin.onAddLinePairButton()
    • Measurements2DMixin.onCalc2DButton()
    • Measurements2DMixin.onToggleShowInstanceSegButton()
    • Measurements2DMixin.previous_timepoint_center
    • Measurements2DMixin.previous_timepoint_orientation
    • Measurements2DMixin.resampledSegNodes
    • Measurements2DMixin.resampledVolumeNodes
    • Measurements2DMixin.setViews()
    • Measurements2DMixin.update_linepair_ui_list()
• utils.rano_utils module
  • circle_opening()
  • circle_opening_on_slices_perpendicular_to_axis()
  • find_closest_plane()
  • find_plane_of_coords()
  • get_all_contained_lines()
  • get_ijk_to_world_matrix()
  • get_instance_segmentation_by_connected_component_analysis()
  • get_max_orthogonal_line_product_coords()
  • get_max_orthogonal_line_product_coords_plane()
  • keep_contained_lines()
  • match_instance_segmentations_by_IoU()
  • point_closest_to_two_lines()
  • run_segmentation()
  • sphere_opening()
  • transform_ijk_to_world_coord()
  • transform_ijk_to_world_coord_np()
  • transform_world_to_ijk_coord()
• utils.report_creation_utils module
  • ReportCreationMixin
    • ReportCreationMixin.create_images()
    • ReportCreationMixin.create_json_file()
    • ReportCreationMixin.create_report()
    • ReportCreationMixin.create_report_pdf()
    • ReportCreationMixin.get_report_dir_from_node()
    • ReportCreationMixin.onCreateReportButton()
    • ReportCreationMixin.table_to_csv()
• utils.response_classification_utils module
  • ResponseClassificationMixin
    • ResponseClassificationMixin.response_assessment_from_rel_area_or_vol()
    • ResponseClassificationMixin.response_assessment_overall()
    • ResponseClassificationMixin.update_overall_response_params()
    • ResponseClassificationMixin.update_overall_response_status()
    • ResponseClassificationMixin.update_response_assessment()
• utils.results_table_utils module
  • ResultsTableMixin
    • ResultsTableMixin.calculate_results_table()
    • ResultsTableMixin.present_table()
• utils.segmentation_utils module
  • SegmentationMixin
    • SegmentationMixin.ImportLabelmapToSegmentationNodeWithBackgroundSegment()
    • SegmentationMixin.get_task_dir()
    • SegmentationMixin.onCalcSegmentationsButton()
    • SegmentationMixin.onCancel()
    • SegmentationMixin.onCliNodeStatusUpdate()
    • SegmentationMixin.onSegmentationCliNodeSuccess()
    • SegmentationMixin.setDefaultSegmentFor2DMeasurements()
    • SegmentationMixin.start_time_t1
    • SegmentationMixin.start_time_t2
• utils.test_rano module
  • RANOTest
    • RANOTest.runTest()
    • RANOTest.setUp()
    • RANOTest.test_RANO_dicom_CPTAC()
    • RANOTest.test_RANO_dicom_KCL()
    • RANOTest.test_RANO_nifti_MU()
    • RANOTest.test_pipeline()
• utils.ui_helper_utils module
  • UIHelperMixin
    • UIHelperMixin.onNodeSelected()
    • UIHelperMixin.onShowChannelButton()
    • UIHelperMixin.setBackgroundVolumes()
    • UIHelperMixin.setLabelVolumes()
    • UIHelperMixin.setup_add_data_box()
    • UIHelperMixin.setup_auto_2D_measurements()
    • UIHelperMixin.setup_autosegmentation_box()
    • UIHelperMixin.setup_input_box()
    • UIHelperMixin.setup_layout()
    • UIHelperMixin.setup_lesion_based_response_status_box()
    • UIHelperMixin.setup_manual_2D_measurements()
    • UIHelperMixin.setup_overall_response_status_box()
    • UIHelperMixin.setup_test_cases()
    • UIHelperMixin.update_ui_input_channel_selectors()