Index

_

__delitem__() (utils.measurements2D_utils.LineNodePairList method) __repr__() (utils.measurements2D_utils.LineNodePair method)

_parameterNode (RANO.RANOWidget attribute) _updatingGUIFromParameterNode (RANO.RANOWidget attribute)

A

annotate_with_text() (utils.measurements2D_utils.LineNodePair method), [1]

B

Baseline (utils.enums.RefScanRole attribute), [1]

C

calculate_results_table() (utils.results_table_utils.ResultsTableMixin static method), [1] CCR (utils.enums.OverallResponse attribute), [1] CE (utils.enums.TumorComponentsForEval attribute), [1] centerTimepointViewsOnCenterPoint() (utils.measurements2D_utils.Measurements2DMixin static method), [1] centerTimepointViewsOnFirstMarkupPoint() (utils.measurements2D_utils.Measurements2DMixin static method), [1] circle_opening() (in module utils.rano_utils), [1] circle_opening_on_slices_perpendicular_to_axis() (in module utils.rano_utils), [1] cleanup() (RANO.RANOWidget method), [1] (utils.measurements2D_utils.LineNodePair method), [1] ClinicalStatus (class in utils.enums), [1] coords_ijk_to_world() (utils.measurements2D_utils.Measurements2DMixin method), [1] CPD (utils.enums.OverallResponse attribute), [1] CPR (utils.enums.OverallResponse attribute), [1]

CR (utils.enums.CurrScanRole attribute), [1] (utils.enums.OverallResponse attribute), [1] (utils.enums.RefScanRole attribute), [1] (utils.enums.Response attribute), [1] create_fiducialNodeFor_text() (utils.measurements2D_utils.LineNodePair method), [1] create_images() (utils.report_creation_utils.ReportCreationMixin method), [1] create_json_file() (utils.report_creation_utils.ReportCreationMixin method), [1] create_report() (utils.report_creation_utils.ReportCreationMixin method), [1] create_report_pdf() (utils.report_creation_utils.ReportCreationMixin method), [1] create_twoLineNodes() (utils.measurements2D_utils.LineNodePair static method), [1] CSD (utils.enums.OverallResponse attribute), [1] CurrScanRole (class in utils.enums), [1] custom_sort() (utils.measurements2D_utils.LineNodePairList method), [1]

D

debug (in module utils.config), [1] (in module utils.RANOLogic) decide_enhancing() (utils.measurements2D_utils.LineNodePairList method), [1] decide_measurable() (utils.measurements2D_utils.LineNodePairList method), [1] decide_target() (utils.measurements2D_utils.LineNodePairList method), [1] description() (utils.enums.ClinicalStatus method), [1] (utils.enums.CurrScanRole method), [1] (utils.enums.NonTargetOrNonMeasLes method), [1] (utils.enums.OverallResponse method), [1] (utils.enums.RefScanRole method), [1] (utils.enums.Response method), [1] (utils.enums.SteroidDose method), [1] (utils.enums.TumorComponentsForEval method), [1]

description_detailed() (utils.enums.Response method), [1] dynunet_pipeline_path (in module utils.config), [1]

E

enhancing (utils.measurements2D_utils.LineNodePair attribute), [1]

enter() (RANO.RANOWidget method), [1] exit() (RANO.RANOWidget method), [1]

F

fiducialNodeForText (utils.measurements2D_utils.LineNodePair attribute), [1]

find_closest_plane() (in module utils.rano_utils), [1] find_plane_of_coords() (in module utils.rano_utils), [1]

G

get_all_contained_lines() (in module utils.rano_utils), [1] get_coords() (utils.measurements2D_utils.LineNodePair method), [1] get_ijk_to_world_matrix() (in module utils.rano_utils), [1] get_instance_segmentation_by_connected_component_analysis() (in module utils.rano_utils), [1] get_line_length_product() (utils.measurements2D_utils.LineNodePair method), [1] get_line_lengths() (utils.measurements2D_utils.LineNodePair method), [1] get_max_orthogonal_line_product_coords() (in module utils.rano_utils), [1] get_max_orthogonal_line_product_coords_plane() (in module utils.rano_utils), [1]

get_number_of_disappeared_target_lesions() (utils.measurements2D_utils.LineNodePairList method), [1] get_number_of_new_measurable_lesions() (utils.measurements2D_utils.LineNodePairList method), [1] get_number_of_new_target_lesions() (utils.measurements2D_utils.LineNodePairList method), [1] get_number_of_targets() (utils.measurements2D_utils.LineNodePairList method), [1] get_rel_area_change() (utils.measurements2D_utils.LineNodePairList method), [1] get_report_dir_from_node() (utils.report_creation_utils.ReportCreationMixin static method), [1] get_sum_of_bidimensional_products() (utils.measurements2D_utils.LineNodePairList method), [1] get_task_dir() (utils.segmentation_utils.SegmentationMixin static method), [1]

I

ImportLabelmapToSegmentationNodeWithBackgroundSegment() (utils.segmentation_utils.SegmentationMixin static method), [1] initializeParameterNode() (RANO.RANOWidget method), [1]

installAndImportDependencies() (in module RANO), [1] installExtension() (in module RANO), [1] instance_segmentations_matched (utils.measurements2D_utils.Measurements2DMixin attribute), [1]

K

keep_contained_lines() (in module utils.rano_utils), [1]

L

lesion_idx (utils.measurements2D_utils.LineNodePair attribute), [1] LineNodePair (class in utils.measurements2D_utils), [1]

LineNodePairList (class in utils.measurements2D_utils), [1] logic (RANO.RANOWidget attribute)

M

match_instance_segmentations_by_IoU() (in module utils.rano_utils), [1] measurable (utils.measurements2D_utils.LineNodePair attribute), [1] Measurements2DMixin (class in utils.measurements2D_utils), [1] Mixed (utils.enums.TumorComponentsForEval attribute), [1] module RANO, [1] utils, [1] utils.config, [1] utils.enums, [1] utils.measurements2D_utils, [1] utils.rano_utils, [1] utils.RANOLogic, [1] utils.report_creation_utils, [1] utils.response_classification_utils, [1] utils.results_table_utils, [1] utils.segmentation_utils, [1] utils.test_rano, [1] utils.ui_helper_utils, [1]

module_path (in module utils.config), [1]

N

No (utils.enums.SteroidDose attribute), [1] NonCE (utils.enums.TumorComponentsForEval attribute), [1]

NoneOrStableOrCR (utils.enums.NonTargetOrNonMeasLes attribute), [1] NonTargetOrNonMeasLes (class in utils.enums), [1]

O

observations (utils.measurements2D_utils.LineNodePair attribute), [1] (utils.measurements2D_utils.Measurements2DMixin attribute), [1] observations2 (utils.measurements2D_utils.Measurements2DMixin attribute), [1] onAddLinePairButton() (utils.measurements2D_utils.Measurements2DMixin method), [1] onCalc2DButton() (utils.measurements2D_utils.Measurements2DMixin method), [1] onCalcSegmentationsButton() (utils.segmentation_utils.SegmentationMixin method), [1] onCancel() (utils.segmentation_utils.SegmentationMixin method), [1] onCliNodeStatusUpdate() (utils.segmentation_utils.SegmentationMixin method), [1]

onCreateReportButton() (utils.report_creation_utils.ReportCreationMixin method), [1] onNodeSelected() (utils.ui_helper_utils.UIHelperMixin method), [1] onSceneEndClose() (RANO.RANOWidget method), [1] onSceneStartClose() (RANO.RANOWidget method), [1] onSegmentationCliNodeSuccess() (utils.segmentation_utils.SegmentationMixin method), [1] onShowChannelButton() (utils.ui_helper_utils.UIHelperMixin method), [1] onToggleShowInstanceSegButton() (utils.measurements2D_utils.Measurements2DMixin method), [1] OverallResponse (class in utils.enums), [1]

P

PCR (utils.enums.OverallResponse attribute), [1] PD (utils.enums.CurrScanRole attribute), [1] (utils.enums.OverallResponse attribute), [1] (utils.enums.RefScanRole attribute), [1] (utils.enums.Response attribute), [1] point_closest_to_two_lines() (in module utils.rano_utils), [1] pop() (utils.measurements2D_utils.LineNodePairList method), [1] PPD (utils.enums.OverallResponse attribute), [1] (utils.enums.RefScanRole attribute), [1]

PPR (utils.enums.OverallResponse attribute), [1] PR (utils.enums.CurrScanRole attribute), [1] (utils.enums.OverallResponse attribute), [1] (utils.enums.RefScanRole attribute), [1] (utils.enums.Response attribute), [1] present_table() (utils.results_table_utils.ResultsTableMixin static method), [1] previous_timepoint_center (utils.measurements2D_utils.Measurements2DMixin attribute), [1] previous_timepoint_orientation (utils.measurements2D_utils.Measurements2DMixin attribute), [1] PSD (utils.enums.OverallResponse attribute), [1]

R

RANO module, [1] RANO (class in RANO), [1] RANOLogic (class in utils.RANOLogic), [1] RANOTest (class in utils.test_rano), [1] RANOWidget (class in RANO), [1] RefScanRole (class in utils.enums), [1] ReportCreationMixin (class in utils.report_creation_utils), [1] reports_path (in module utils.config), [1]

resampledSegNodes (utils.measurements2D_utils.Measurements2DMixin attribute), [1] resampledVolumeNodes (utils.measurements2D_utils.Measurements2DMixin attribute), [1] Response (class in utils.enums), [1] response_assessment_from_rel_area_or_vol() (utils.response_classification_utils.ResponseClassificationMixin static method), [1] response_assessment_overall() (utils.response_classification_utils.ResponseClassificationMixin static method), [1] ResponseClassificationMixin (class in utils.response_classification_utils), [1] ResultsTableMixin (class in utils.results_table_utils), [1] run_segmentation() (in module utils.rano_utils), [1] runTest() (utils.test_rano.RANOTest method), [1]

S

SD (utils.enums.CurrScanRole attribute), [1] (utils.enums.OverallResponse attribute), [1] (utils.enums.RefScanRole attribute), [1] (utils.enums.Response attribute), [1] SegmentationMixin (class in utils.segmentation_utils), [1] set_color_depending_on_orthogonality() (utils.measurements2D_utils.LineNodePair static method), [1] set_coords() (utils.measurements2D_utils.LineNodePair method), [1] setBackgroundVolumes() (utils.ui_helper_utils.UIHelperMixin static method), [1] setDefaultParameters() (utils.RANOLogic.RANOLogic static method), [1] setDefaultSegmentFor2DMeasurements() (utils.segmentation_utils.SegmentationMixin method), [1] setLabelVolumes() (utils.ui_helper_utils.UIHelperMixin static method), [1] setParameterNode() (RANO.RANOWidget method), [1] setup() (RANO.RANOWidget method), [1] setUp() (utils.test_rano.RANOTest method), [1]

setup_add_data_box() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_auto_2D_measurements() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_autosegmentation_box() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_input_box() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_layout() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_lesion_based_response_status_box() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_manual_2D_measurements() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_overall_response_status_box() (utils.ui_helper_utils.UIHelperMixin method), [1] setup_test_cases() (utils.ui_helper_utils.UIHelperMixin method), [1] setViews() (utils.measurements2D_utils.Measurements2DMixin static method), [1] sphere_opening() (in module utils.rano_utils), [1] StableOrImproved (utils.enums.ClinicalStatus attribute), [1] start_time_t1 (utils.segmentation_utils.SegmentationMixin attribute), [1] start_time_t2 (utils.segmentation_utils.SegmentationMixin attribute), [1] SteroidDose (class in utils.enums), [1]

T

table_to_csv() (utils.report_creation_utils.ReportCreationMixin static method), [1] target (utils.measurements2D_utils.LineNodePair attribute), [1] test_data_path (in module utils.config), [1] test_pipeline() (utils.test_rano.RANOTest method), [1] test_RANO_dicom_CPTAC() (utils.test_rano.RANOTest method), [1] test_RANO_dicom_KCL() (utils.test_rano.RANOTest method), [1]

test_RANO_nifti_MU() (utils.test_rano.RANOTest method), [1] timepoint (utils.measurements2D_utils.LineNodePair attribute), [1] transform_ijk_to_world_coord() (in module utils.rano_utils), [1] transform_ijk_to_world_coord_np() (in module utils.rano_utils), [1] transform_world_to_ijk_coord() (in module utils.rano_utils), [1] TumorComponentsForEval (class in utils.enums), [1]

U

ui (RANO.RANOWidget attribute) UIHelperMixin (class in utils.ui_helper_utils), [1] update_linepair_ui_list() (utils.measurements2D_utils.Measurements2DMixin method), [1] update_overall_response_params() (utils.response_classification_utils.ResponseClassificationMixin static method), [1] update_overall_response_status() (utils.response_classification_utils.ResponseClassificationMixin static method), [1] update_response_assessment() (utils.response_classification_utils.ResponseClassificationMixin static method), [1] update_ui_input_channel_selectors() (utils.ui_helper_utils.UIHelperMixin method), [1] updateGUIFromParameterNode() (RANO.RANOWidget method), [1] updateParameterNodeFromGUI() (RANO.RANOWidget method), [1] uponLineNodeModifiedEvent() (utils.measurements2D_utils.LineNodePair method), [1] uponModified() (utils.measurements2D_utils.LineNodePairList method), [1] utils module, [1] utils.config module, [1] utils.enums module, [1]

utils.measurements2D_utils module, [1] utils.rano_utils module, [1] utils.RANOLogic module, [1] utils.report_creation_utils module, [1] utils.response_classification_utils module, [1] utils.results_table_utils module, [1] utils.segmentation_utils module, [1] utils.test_rano module, [1] utils.ui_helper_utils module, [1]

W

Worse (utils.enums.ClinicalStatus attribute), [1] (utils.enums.NonTargetOrNonMeasLes attribute), [1]

Y

Yes (utils.enums.SteroidDose attribute), [1]